IRF5 Knockdown: Integrated and Interactive RNA-seq Analysis Report
Overview
It provides the QC metrics and expression tables, including overall read mapping statistics, QC report for each sample, interactive gene expression visualization and analytical tools to gain insights about the data. Please click 
for interactive plots.
for interactive plots.
Parallel Plot of QC
Click on the image above to access the interactive plot.
Raw Data
Expression Tables
Raw Data Files
| sample.annotation.txt | sample annotation file |
| star-mapping-summary.txt | read mapping summary for STAR run |
| fc-counting-summary.txt | read counting summary for featureCounts run |
| RSeQC-read-distribution.txt | The distribution of mapped reads along gene elements |
| Gene-count-table.txt | counting table |
| Gene-count-table.flt.txt | filtered counting table. A gene is filtered if having 0 read in more than 50% samples |
| Gene-fpkm-table.txt | RPKM table, calculated from Gene-count-table.txt |
| Gene-fpkm-table.flt.txt | filtered RPKM table, calculated from Gene-count-table.flt.txt |
| RNASeq-expr-QC.txt | correlation based QC of expression profile |
| RNASeq-expr-corr.txt | All-against-all gene expression correlation matrix |
| RNASeq-snp-corr.txt | All-against-all SNP correlation matrix |
| RNASeq-merged-metrics.txt | Merged RNA-seq metrics from mapping, counting, distribution and QC |
| read_map_sum.10x7.png | plot of star-mapping-summary.txt. Intended for powerpoint presentation. |
| read_map_sum.png | plot of star-mapping-summary.txt. Intended for interactive HTML presentation. |
| read_count_sum.10x7.png | plot of fc-counting-summary.txt. Intended for powerpoint presentation. |
| read_count_sum.png | plot of fc-counting-summary.txt. Intended for interactive HTML presentation. |
| read_dist_sum.10x7.png | plot of RSeQC-read-distribution.txt. Intended for powerpoint presentation. |
| read_dist_sum.png | plot of RSeQC-read-distribution.txt. Intended for interactive HTML presentation. |
| expr_count_RPKM.10x7.png | plot the number of genes with a give RPKM cutoff. Intended for powerpoint presentation. |
| expr_count_RPKM.png | plot the number of genes with a give RPKM cutoff. Intended for interactive HTML presentation. |
| RNASeq-expr-corr.txt.corr.9x7.png | correlation plot for RNASeq-expr-corr.txt.Intended for powerpoint presentation. |
| RNASeq-expr-corr.txt.corr.png | correlation plot for RNASeq-expr-corr.txt.Intended for interactive HTML presentation. |
| RNASeq-snp-corr.txt.corr.9x7.png | correlation plot for RNASeq-snp-corr.txt.Intended for powerpoint presentation. |
| RNASeq-snp-corr.txt.corr.png | correlation plot for RNASeq-snp-corr.txt |
References