Sample	Subject_ID	Cell_Type	Genotype	Age	Sex	Treatment	Total_reads	Uniq_Rate	Multi_Rate	Unmap_Rate	Uniq_Mapped_Reads	Gene_Rate	Ambiguity_Rate	No_Feature_Rate	Avg_Corr	Corr_diff	MADScore	isOutlier	Pct_MT	Pct_Top1	Pct_Top10
MG-Sal-WT-1F	subject94	Microglia	WT	2m	F	Saline	14163830	88.57	4.26	7.17	12544884	81.07	3.88	15.04	0.75	-0.02	-1.54	N	0	6.4	17.6
MG-Sal-WT-2F	subject95	Microglia	WT	2m	F	Saline	15407000	89.76	4.17	6.07	13828849	82.53	3.71	13.76	0.76	-0.01	-1.05	N	0	6.3	17
MG-Sal-WT-3M	subject96	Microglia	WT	2m	M	Saline	19455104	90.26	3.94	5.8	17559955	84.92	3.73	11.35	0.76	-0.01	-1.14	N	0	6.2	16.9
MG-Sal-WT-4M	subject97	Microglia	WT	2m	M	Saline	17714624	89.03	4.07	6.9	15771723	85.43	3.84	10.72	0.76	-0.01	-0.97	N	0	6.3	17.3
MG-Sal-KO-1F	subject98	Microglia	KO	2m	F	Saline	14429702	89.23	4.23	6.54	12875049	79.81	3.65	16.55	0.75	-0.02	-1.56	N	0	5.8	16.9
MG-Sal-KO-2F	subject99	Microglia	KO	2m	F	Saline	14120898	89.12	4.22	6.66	12585135	81.35	3.83	14.82	0.75	-0.02	-1.6	N	0	5.9	17.3
MG-Sal-KO-3F	subject100	Microglia	KO	2m	F	Saline	15091374	89.91	3.82	6.27	13568037	78.54	3.49	17.97	0.75	-0.03	-2	N	0	5.4	16.1
MG-LPS-WT-10F	subject106	Microglia	WT	2m	F	LPS	14991783	86.23	6.03	7.74	12928153	85.54	3.53	10.94	0.78	0.01	0.65	N	0	3.8	14.4
MG-LPS-WT-11F	subject107	Microglia	WT	2m	F	LPS	14363456	88.52	5.18	6.3	12714028	85.05	3.41	11.54	0.79	0.01	0.81	N	0	3.7	13.8
MG-LPS-WT-12F	subject109	Microglia	WT	2m	F	LPS	17075487	87.98	4.96	7.06	15022723	83.44	3.39	13.17	0.78	0.01	0.66	N	0	3.4	13.3
MG-LPS-WT-5F	subject102	Microglia	WT	2m	F	LPS	14263211	88.08	4.97	6.95	12563196	83.59	3.48	12.92	0.77	0	0.05	N	0	3.7	13.4
MG-LPS-WT-6F	subject103	Microglia	WT	2m	F	LPS	13451060	88.51	4.8	6.69	11904862	80.37	3.51	16.11	0.77	-0.01	-0.63	N	0	4.2	15.2
MG-LPS-WT-11M	subject108	Microglia	WT	2m	M	LPS	15364177	88.8	4.77	6.43	13643895	82.5	3.33	14.16	0.78	0.01	0.47	N	0	3.3	13.6
MG-LPS-WT-1M	subject101	Microglia	WT	2m	M	LPS	14911753	89.24	3.82	6.94	13306578	78.74	3.38	17.88	0.74	-0.03	-2.32	N	0	6	16.6
MG-LPS-WT-8M	subject104	Microglia	WT	2m	M	LPS	13232750	87.15	5.42	7.43	11532330	83.2	3.45	13.34	0.77	0	0.04	N	0	3.6	13.8
MG-LPS-WT-9M	subject105	Microglia	WT	2m	M	LPS	14247389	87.17	5.3	7.53	12419743	86.83	3.67	9.5	0.79	0.02	1.06	N	0	3.6	13.8
MG-LPS-Het-10F	subject117	Microglia	Het	2m	F	LPS	18741728	88.15	5.03	6.82	16521215	84.98	3.63	11.39	0.78	0.01	0.63	N	0	4.1	14.5
MG-LPS-Het-6F	subject113	Microglia	Het	2m	F	LPS	18019149	87.69	5.4	6.91	15800564	87.71	3.62	8.67	0.79	0.02	1.02	N	0	3.6	14
MG-LPS-Het-9F	subject116	Microglia	Het	2m	F	LPS	16395085	89.26	4.69	6.05	14634496	83.75	3.31	12.93	0.78	0.01	0.65	N	0	3	12.5
MG-LPS-Het-3M	subject110	Microglia	Het	2m	M	LPS	16451993	87.64	5.7	6.66	14418416	84.58	3.47	11.95	0.78	0.01	0.4	N	0	3.1	14.8
MG-LPS-Het-4M	subject111	Microglia	Het	2m	M	LPS	16032627	87.27	5.83	6.9	13991168	87.33	3.64	9.03	0.79	0.02	0.98	N	0	3.8	14.9
MG-LPS-Het-5M	subject112	Microglia	Het	2m	M	LPS	16799448	87.54	5.42	7.04	14705795	84.94	3.52	11.54	0.78	0.01	0.46	N	0	3.3	13.3
MG-LPS-Het-7M	subject114	Microglia	Het	2m	M	LPS	15475476	89.52	4.15	6.33	13854051	84.16	3.93	11.91	0.76	-0.01	-1.01	N	0	5.7	16.5
MG-LPS-Het-8M	subject115	Microglia	Het	2m	M	LPS	16353038	89.16	5.01	5.83	14579682	87.04	3.58	9.37	0.79	0.02	1.11	N	0	3.7	13.5
MG-LPS-KO-12F	subject122	Microglia	KO	2m	F	LPS	15651561	88.39	4.98	6.63	13834709	84.57	3.51	11.92	0.78	0.01	0.7	N	0	3.4	13.9
MG-LPS-KO-13F	subject123	Microglia	KO	2m	F	LPS	15190526	90.01	4.34	5.65	13672476	88.59	4.2	7.21	0.78	0.01	0.27	N	0	5.9	17.8
MG-LPS-KO-8F	subject118	Microglia	KO	2m	F	LPS	15427831	87.83	5.36	6.81	13550917	85.57	3.64	10.79	0.79	0.01	0.84	N	0	3.6	14.7
MG-LPS-KO-9F	subject119	Microglia	KO	2m	F	LPS	15020164	88.32	5.08	6.6	13265844	86.91	3.53	9.57	0.79	0.02	0.91	N	0	3.6	13.5
MG-LPS-KO-10M	subject120	Microglia	KO	2m	M	LPS	16021540	87.98	5.37	6.65	14096522	85.19	3.68	11.13	0.78	0.01	0.43	N	0	4.1	14.1
MG-LPS-KO-11M	subject121	Microglia	KO	2m	M	LPS	15846342	87.68	5.29	7.03	13894167	87.25	3.62	9.13	0.79	0.02	1.25	N	0	3.5	13.5
MG-LPS-KO-14M	subject124	Microglia	KO	2m	M	LPS	12799543	87.46	5.35	7.19	11194992	85.01	3.59	11.4	0.78	0.01	0.57	N	0	3.7	13.8
PC-Sal-WT-1F	subject125	Peritoneal	WT	2m	F	Saline	15309587	76.21	10.25	13.54	11666911	92.12	3.01	4.87	0.77	0	-0.33	N	0	4.2	15
PC-Sal-WT-2F	subject126	Peritoneal	WT	2m	F	Saline	13026263	83.37	7.63	9	10860615	92.51	3.16	4.34	0.77	0	-0.44	N	0	4.8	15.1
PC-Sal-WT-3M	subject127	Peritoneal	WT	2m	M	Saline	13420251	85.37	7.34	7.29	11457283	90.61	3.23	6.16	0.78	0.01	0.36	N	0	3.9	14.2
PC-Sal-WT-4M	subject128	Peritoneal	WT	2m	M	Saline	13749933	83.75	8.02	8.23	11516042	91.84	3.19	4.97	0.78	0.01	0.25	N	0	3.8	14.2
PC-Sal-KO-1F	subject129	Peritoneal	KO	2m	F	Saline	13463794	84.22	7.33	8.45	11339230	92.33	3.44	4.23	0.77	0	-0.25	N	0	4.6	16.2
PC-Sal-KO-2F	subject130	Peritoneal	KO	2m	F	Saline	13247855	84.4	7.29	8.31	11181449	92.95	3.34	3.71	0.78	0	0.16	N	0	4.9	16
PC-Sal-KO-3F	subject131	Peritoneal	KO	2m	F	Saline	14881902	83.39	8.04	8.57	12409876	91.91	3.32	4.76	0.77	0	-0.37	N	0	7.5	17.5
PC-LPS-WT-10F	subject137	Peritoneal	WT	2m	F	LPS	14539690	82.52	8.15	9.33	11998385	92.71	3.07	4.22	0.75	-0.02	-1.41	N	0	2.6	16.7
PC-LPS-WT-11F	subject138	Peritoneal	WT	2m	F	LPS	14931683	84.07	7.46	8.47	12553436	91.55	3.35	5.11	0.77	0	-0.33	N	0	5.6	16.4
PC-LPS-WT-12F	subject140	Peritoneal	WT	2m	F	LPS	14354036	83.95	7.36	8.69	12050720	92.28	2.95	4.77	0.76	-0.01	-1.08	N	0	5.6	22.8
PC-LPS-WT-5F	subject133	Peritoneal	WT	2m	F	LPS	14232601	83.82	7.74	8.44	11929199	91.39	3.1	5.51	0.77	0	-0.19	N	0	2.7	11.7
PC-LPS-WT-6F	subject134	Peritoneal	WT	2m	F	LPS	17727513	84.68	7.27	8.05	15012082	92.23	2.96	4.81	0.76	-0.01	-0.96	N	0	4.8	19.6
PC-LPS-WT-11M	subject139	Peritoneal	WT	2m	M	LPS	14547045	82.79	8.59	8.62	12044212	93.01	3.11	3.88	0.76	-0.01	-1.15	N	0	4.1	19.8
PC-LPS-WT-1M	subject132	Peritoneal	WT	2m	M	LPS	14720474	82.24	9.26	8.5	12105923	91.14	2.95	5.91	0.77	0	0.01	N	0	6.2	19.7
PC-LPS-WT-8M	subject135	Peritoneal	WT	2m	M	LPS	14645733	84.78	7.13	8.09	12417129	92.04	2.95	5.01	0.76	-0.01	-0.83	N	0	6	23.5
PC-LPS-WT-9M	subject136	Peritoneal	WT	2m	M	LPS	14365891	84.09	7.28	8.63	12079758	92.68	3	4.31	0.77	0	-0.15	N	0	5.2	22.3
PC-LPS-Het-10F	subject148	Peritoneal	Het	2m	F	LPS	17552120	82.88	7.91	9.21	14547623	89.99	2.96	7.05	0.76	-0.01	-1.09	N	0	4.9	20.6
PC-LPS-Het-6F	subject144	Peritoneal	Het	2m	F	LPS	23062607	83.78	7.51	8.71	19322187	91.18	2.82	6	0.76	-0.02	-1.28	N	0	6.3	22.6
PC-LPS-Het-9F	subject147	Peritoneal	Het	2m	F	LPS	15993872	82.94	8.51	8.55	13264910	92.65	3.11	4.24	0.76	-0.01	-0.77	N	0	3.8	18.1
PC-LPS-Het-3M	subject141	Peritoneal	Het	2m	M	LPS	13030856	84.03	7.11	8.86	10949232	92.19	2.93	4.88	0.76	-0.01	-0.69	N	0	6.1	24.3
PC-LPS-Het-4M	subject142	Peritoneal	Het	2m	M	LPS	16035488	83.7	7.6	8.7	13421856	93.3	2.97	3.73	0.76	-0.01	-1.06	N	0	4.6	19.7
PC-LPS-Het-5M	subject143	Peritoneal	Het	2m	M	LPS	20145767	85.2	7.07	7.73	17164366	92.34	3.19	4.47	0.77	0	0.02	N	0	3.4	18.5
PC-LPS-Het-7M	subject145	Peritoneal	Het	2m	M	LPS	15000814	83.69	7.77	8.54	12553912	93.88	3.21	2.91	0.78	0.01	0.79	N	0	2.8	13.7
PC-LPS-Het-8M	subject146	Peritoneal	Het	2m	M	LPS	14740993	83.7	7.75	8.55	12337729	93.19	2.99	3.82	0.77	0	-0.42	N	0	4.8	20.9
PC-LPS-KO-12F	subject153	Peritoneal	KO	2m	F	LPS	23553389	83.33	7.73	8.94	19627097	90.37	3.04	6.59	0.76	-0.01	-0.7	N	0	3.8	16.8
PC-LPS-KO-13F	subject154	Peritoneal	KO	2m	F	LPS	17919801	83.97	7.65	8.38	15046805	92.32	3.48	4.2	0.77	0	0.01	N	0	7	16.4
PC-LPS-KO-8F	subject149	Peritoneal	KO	2m	F	LPS	13703747	82.36	7.88	9.76	11286390	91.98	3.02	5	0.76	-0.01	-0.83	N	0	4.6	20.3
PC-LPS-KO-9F	subject150	Peritoneal	KO	2m	F	LPS	23303529	83.62	7.46	8.92	19486477	93.55	3.73	2.72	0.78	0.01	0.34	N	0	9.7	18.6
PC-LPS-KO-10M	subject151	Peritoneal	KO	2m	M	LPS	18811184	83.98	7.84	8.18	15797762	93.22	3.23	3.55	0.78	0.01	0.26	N	0	4	15.1
PC-LPS-KO-11M	subject152	Peritoneal	KO	2m	M	LPS	20767813	84.04	7.67	8.29	17453212	92.9	3.02	4.07	0.78	0.01	0.29	N	0	4	19.6
PC-LPS-KO-14M	subject155	Peritoneal	KO	2m	M	LPS	20905864	84.36	7.62	8.02	17635180	92.4	3.14	4.46	0.77	0	-0.01	N	0	3.6	18.9